ubuntu-25.04-5.4_opam-2.4

2025-12-09 01:29.37: New job: test ahrefs/atd https://github.com/ahrefs/atd.git#refs/heads/martin/node-permission-denied (8a524216d749e000b285b025bb8722f7f8407943) (linux-x86_64:ubuntu-25.04-5.4_opam-2.4)
Base: ocaml/opam:ubuntu-25.04-ocaml-5.4@sha256:317ab3a2251a14fd41554ae61c0a9130d4d6b4a163f1b44dee089c0c3e18779a
Opam project build


To reproduce locally:


git clone --recursive "https://github.com/ahrefs/atd.git" -b "martin/node-permission-denied" && cd "atd" && git reset --hard 8a524216
cat > Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam:ubuntu-25.04-ocaml-5.4@sha256:317ab3a2251a14fd41554ae61c0a9130d4d6b4a163f1b44dee089c0c3e18779a
# ubuntu-25.04-5.4_opam-2.4
USER 1000:1000
ENV CLICOLOR_FORCE="1"
ENV OPAMCOLOR="always"
WORKDIR /src
RUN sudo ln -f /usr/bin/opam-2.4 /usr/bin/opam
RUN opam init --reinit -ni
RUN uname -rs && opam exec -- ocaml -version && opam --version
WORKDIR /src
RUN sudo chown opam /src
RUN cd ~/opam-repository && (git cat-file -e 8a324a5b9945e0e515da441ede437f3756caa83d || git fetch origin master) && git reset -q --hard 8a324a5b9945e0e515da441ede437f3756caa83d && git log --no-decorate -n1 --oneline && opam update -u
COPY --chown=1000:1000 atdts.opam atds.opam atdpy.opam atdj.opam atdgen.opam atdgen-runtime.opam atdgen-codec-runtime.opam atdd.opam atdcpp.opam atd.opam ./
RUN opam pin add -yn atdts.dev './' && \
opam pin add -yn atds.dev './' && \
opam pin add -yn atdpy.dev './' && \
opam pin add -yn atdj.dev './' && \
opam pin add -yn atdgen.dev './' && \
opam pin add -yn atdgen-runtime.dev './' && \
opam pin add -yn atdgen-codec-runtime.dev './' && \
opam pin add -yn atdd.dev './' && \
opam pin add -yn atdcpp.dev './' && \
opam pin add -yn atd.dev './'
RUN echo '(lang dune 3.0)' > './dune-project'
ENV DEPS="alcotest.1.9.1 astring.0.8.5 base-bigarray.base base-domains.base base-effects.base base-nnp.base base-threads.base base-unix.base biniou.1.2.2 camlp-streams.5.0.1 cmdliner.2.1.0 conf-python-3.9.0.0 dune.3.20.2 easy-format.1.3.4 fmt.0.11.0 menhir.20250912 menhirCST.20250912 menhirLib.20250912 menhirSdk.20250912 ocaml.5.4.0 ocaml-base-compiler.5.4.0 ocaml-compiler.5.4.0 ocaml-config.3 ocaml-options-vanilla.1 ocaml-syntax-shims.1.0.0 ocamlbuild.0.16.1 ocamlfind.1.9.8 re.1.14.0 seq.base stdlib-shims.0.3.0 topkg.1.1.1 uutf.1.0.4 yojson.2.2.2"
ENV CI="true"
ENV OCAMLCI="true"
RUN opam update --depexts && opam install --cli=2.4 --depext-only -y atdts.dev atds.dev atdpy.dev atdj.dev atdgen.dev atdgen-runtime.dev atdgen-codec-runtime.dev atdd.dev atdcpp.dev atd.dev $DEPS
RUN opam install $DEPS
COPY --chown=1000:1000 . /src
RUN opam exec -- dune build @install @check @runtest && rm -rf _build


END-OF-DOCKERFILE
docker build .
END-REPRO-BLOCK


2025-12-09 01:29.37: Using cache hint "ahrefs/atd-ocaml/opam:ubuntu-25.04-ocaml-5.4@sha256:317ab3a2251a14fd41554ae61c0a9130d4d6b4a163f1b44dee089c0c3e18779a-ubuntu-25.04-5.4_opam-2.4-62b2629b23f11a0873ebdc6b080252cf"
2025-12-09 01:29.37: Using OBuilder spec:
((from ocaml/opam:ubuntu-25.04-ocaml-5.4@sha256:317ab3a2251a14fd41554ae61c0a9130d4d6b4a163f1b44dee089c0c3e18779a)
(comment ubuntu-25.04-5.4_opam-2.4)
(user (uid 1000) (gid 1000))
(env CLICOLOR_FORCE 1)
(env OPAMCOLOR always)
(workdir /src)
(run (shell "sudo ln -f /usr/bin/opam-2.4 /usr/bin/opam"))
(run (shell "opam init --reinit -ni"))
(run (shell "uname -rs && opam exec -- ocaml -version && opam --version"))
(workdir /src)
(run (shell "sudo chown opam /src"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "cd ~/opam-repository && (git cat-file -e 8a324a5b9945e0e515da441ede437f3756caa83d || git fetch origin master) && git reset -q --hard 8a324a5b9945e0e515da441ede437f3756caa83d && git log --no-decorate -n1 --oneline && opam update -u"))
(copy (src atdts.opam atds.opam atdpy.opam atdj.opam atdgen.opam atdgen-runtime.opam atdgen-codec-runtime.opam atdd.opam atdcpp.opam atd.opam)
(dst ./))
(run (network host)
(shell  "opam pin add -yn atdts.dev './' && \
\nopam pin add -yn atds.dev './' && \
\nopam pin add -yn atdpy.dev './' && \
\nopam pin add -yn atdj.dev './' && \
\nopam pin add -yn atdgen.dev './' && \
\nopam pin add -yn atdgen-runtime.dev './' && \
\nopam pin add -yn atdgen-codec-runtime.dev './' && \
\nopam pin add -yn atdd.dev './' && \
\nopam pin add -yn atdcpp.dev './' && \
\nopam pin add -yn atd.dev './'"))
(run (network host)
(shell "echo '(lang dune 3.0)' > './dune-project'"))
(env DEPS "alcotest.1.9.1 astring.0.8.5 base-bigarray.base base-domains.base base-effects.base base-nnp.base base-threads.base base-unix.base biniou.1.2.2 camlp-streams.5.0.1 cmdliner.2.1.0 conf-python-3.9.0.0 dune.3.20.2 easy-format.1.3.4 fmt.0.11.0 menhir.20250912 menhirCST.20250912 menhirLib.20250912 menhirSdk.20250912 ocaml.5.4.0 ocaml-base-compiler.5.4.0 ocaml-compiler.5.4.0 ocaml-config.3 ocaml-options-vanilla.1 ocaml-syntax-shims.1.0.0 ocamlbuild.0.16.1 ocamlfind.1.9.8 re.1.14.0 seq.base stdlib-shims.0.3.0 topkg.1.1.1 uutf.1.0.4 yojson.2.2.2")
(env CI true)
(env OCAMLCI true)
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam update --depexts && opam install --cli=2.4 --depext-only -y atdts.dev atds.dev atdpy.dev atdj.dev atdgen.dev atdgen-runtime.dev atdgen-codec-runtime.dev atdd.dev atdcpp.dev atd.dev $DEPS"))
(run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam install $DEPS"))
(copy (src .) (dst /src))
(run (shell "opam exec -- dune build @install @check @runtest && rm -rf _build"))
)


2025-12-09 01:29.37: Waiting for resource in pool OCluster
2025-12-09 01:29.37: Waiting for worker…
2025-12-09 01:32.23: Got resource from pool OCluster
Building on toxis.caelum.ci.dev
HEAD is now at f588ab6 Avoid "make: node: Permission denied" occurring on my machine when running the atdpy tests
HEAD is now at 8a52421 Avoid "make: node: Permission denied" occurring on my machine when running the atdpy tests


(from ocaml/opam:ubuntu-25.04-ocaml-5.4@sha256:317ab3a2251a14fd41554ae61c0a9130d4d6b4a163f1b44dee089c0c3e18779a)
Unable to find image 'ocaml/opam:ubuntu-25.04-ocaml-5.4@sha256:317ab3a2251a14fd41554ae61c0a9130d4d6b4a163f1b44dee089c0c3e18779a' locally
docker.io/ocaml/opam@sha256:317ab3a2251a14fd41554ae61c0a9130d4d6b4a163f1b44dee089c0c3e18779a: Pulling from ocaml/opam
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Digest: sha256:317ab3a2251a14fd41554ae61c0a9130d4d6b4a163f1b44dee089c0c3e18779a
Status: Downloaded newer image for ocaml/opam@sha256:317ab3a2251a14fd41554ae61c0a9130d4d6b4a163f1b44dee089c0c3e18779a
2025-12-09 01:34.12 ---> saved as "50e8d351fd85100bcaa09c1a16c9caaf0dd6ebf586c5923343764d4b3caaa07b"


/: (comment ubuntu-25.04-5.4_opam-2.4)


/: (user (uid 1000) (gid 1000))


/: (env CLICOLOR_FORCE 1)


/: (env OPAMCOLOR always)


/: (workdir /src)


/src: (run (shell "sudo ln -f /usr/bin/opam-2.4 /usr/bin/opam"))
2025-12-09 01:34.13 ---> saved as "71eba14205a840ca7ffb685dcd48a7ca4563327d75b28716e665884e192611d1"


/src: (run (shell "opam init --reinit -ni"))
Configuring from /home/opam/.opamrc and then from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.


This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.2, which can't be reverted.
You may want to back it up before going further.


Continue? [Y/n] y
Format upgrade done.


<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
2025-12-09 01:34.53 ---> saved as "d158064ffb6b3a8fec01ede3f94bcf345c1da48a7ae68f21f680e9c676d3f076"


/src: (run (shell "uname -rs && opam exec -- ocaml -version && opam --version"))
Linux 5.15.0-134-generic
The OCaml toplevel, version 5.4.0
2.4.1
2025-12-09 01:34.54 ---> saved as "2c7766b5e71fb89a56f210a84c7eb97fd806a0f5c008feb22a76a3cca7c9f637"


/src: (workdir /src)


/src: (run (shell "sudo chown opam /src"))
2025-12-09 01:34.54 ---> saved as "602e07c899f6d650abc1b32c79d8dd07c19b7959bfbda0fb4e2c4950b65c768a"


/src: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "cd ~/opam-repository && (git cat-file -e 8a324a5b9945e0e515da441ede437f3756caa83d || git fetch origin master) && git reset -q --hard 8a324a5b9945e0e515da441ede437f3756caa83d && git log --no-decorate -n1 --oneline && opam update -u"))
From https://github.com/ocaml/opam-repository
* branch                  master     -> FETCH_HEAD
2ec6d6cc92..2e91c1385f  master     -> origin/master
8a324a5b99 Add: cmdliner.2.1.0 (#28962)


<><> Updating package repositories ><><><><><><><><><><><><><><><><><><><><><><>
[default] synchronised from git+file:///home/opam/opam-repository


Already up-to-date.
Nothing to do.
# To update the current shell environment, run: eval $(opam env)
2025-12-09 01:35.37 ---> saved as "893a928fe8e44bf8ddbb43efb0e42f646fc959c8198a1ec2a502721415ca3f59"


/src: (copy (src atdts.opam atds.opam atdpy.opam atdj.opam atdgen.opam atdgen-runtime.opam atdgen-codec-runtime.opam atdd.opam atdcpp.opam atd.opam)
(dst ./))
2025-12-09 01:35.38 ---> saved as "3a1bd21195eb9a246442228c0f1170aa76113141c4d1be508d32855da69a6b13"


/src: (run (network host)
(shell  "opam pin add -yn atdts.dev './' && \
\nopam pin add -yn atds.dev './' && \
\nopam pin add -yn atdpy.dev './' && \
\nopam pin add -yn atdj.dev './' && \
\nopam pin add -yn atdgen.dev './' && \
\nopam pin add -yn atdgen-runtime.dev './' && \
\nopam pin add -yn atdgen-codec-runtime.dev './' && \
\nopam pin add -yn atdd.dev './' && \
\nopam pin add -yn atdcpp.dev './' && \
\nopam pin add -yn atd.dev './'"))
[atdts.dev] synchronised (file:///src)
atdts is now pinned to file:///src (version dev)
[atds.dev] synchronised (file:///src)
atds is now pinned to file:///src (version dev)
[atdpy.dev] synchronised (file:///src)
atdpy is now pinned to file:///src (version dev)
[atdj.dev] synchronised (file:///src)
atdj is now pinned to file:///src (version dev)
[atdgen.dev] synchronised (file:///src)
atdgen is now pinned to file:///src (version dev)
[atdgen-runtime.dev] synchronised (file:///src)
atdgen-runtime is now pinned to file:///src (version dev)
[atdgen-codec-runtime.dev] synchronised (file:///src)
atdgen-codec-runtime is now pinned to file:///src (version dev)
[atdd.dev] synchronised (file:///src)
atdd is now pinned to file:///src (version dev)
[atdcpp.dev] synchronised (file:///src)
atdcpp is now pinned to file:///src (version dev)
[atd.dev] synchronised (file:///src)
atd is now pinned to file:///src (version dev)
2025-12-09 01:36.08 ---> saved as "652a647f943489dfc093d784feab7f2a367488f0b7d284de4cdef31e35bc7ebd"


/src: (run (network host)
(shell "echo '(lang dune 3.0)' > './dune-project'"))
2025-12-09 01:36.08 ---> saved as "202129a67ec1375dfd9a1ae8bef5e6e35ed329718a9a64bf8986a0794be1aef3"


/src: (env DEPS "alcotest.1.9.1 astring.0.8.5 base-bigarray.base base-domains.base base-effects.base base-nnp.base base-threads.base base-unix.base biniou.1.2.2 camlp-streams.5.0.1 cmdliner.2.1.0 conf-python-3.9.0.0 dune.3.20.2 easy-format.1.3.4 fmt.0.11.0 menhir.20250912 menhirCST.20250912 menhirLib.20250912 menhirSdk.20250912 ocaml.5.4.0 ocaml-base-compiler.5.4.0 ocaml-compiler.5.4.0 ocaml-config.3 ocaml-options-vanilla.1 ocaml-syntax-shims.1.0.0 ocamlbuild.0.16.1 ocamlfind.1.9.8 re.1.14.0 seq.base stdlib-shims.0.3.0 topkg.1.1.1 uutf.1.0.4 yojson.2.2.2")


/src: (env CI true)


/src: (env OCAMLCI true)


/src: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam update --depexts && opam install --cli=2.4 --depext-only -y atdts.dev atds.dev atdpy.dev atdj.dev atdgen.dev atdgen-runtime.dev atdgen-codec-runtime.dev atdd.dev atdcpp.dev atd.dev $DEPS"))
+ /usr/bin/sudo "apt-get" "update"
- Get:1 http://security.ubuntu.com/ubuntu plucky-security InRelease [126 kB]
- Hit:2 http://archive.ubuntu.com/ubuntu plucky InRelease
- Get:3 http://security.ubuntu.com/ubuntu plucky-security/universe amd64 Packages [249 kB]
- Get:4 http://archive.ubuntu.com/ubuntu plucky-updates InRelease [126 kB]
- Get:5 http://security.ubuntu.com/ubuntu plucky-security/main amd64 Packages [377 kB]
- Get:6 http://security.ubuntu.com/ubuntu plucky-security/restricted amd64 Packages [383 kB]
- Get:7 http://archive.ubuntu.com/ubuntu plucky-backports InRelease [126 kB]
- Get:8 http://archive.ubuntu.com/ubuntu plucky-updates/main amd64 Packages [538 kB]
- Get:9 http://archive.ubuntu.com/ubuntu plucky-updates/restricted amd64 Packages [411 kB]
- Get:10 http://archive.ubuntu.com/ubuntu plucky-updates/universe amd64 Packages [325 kB]
- Fetched 2661 kB in 2s (1690 kB/s)
- Reading package lists...
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<><> Synchronising pinned packages ><><><><><><><><><><><><><><><><><><><><><><>
[atd.dev] synchronised (file:///src)
[atdcpp.dev] synchronised (file:///src)
[atdd.dev] synchronised (file:///src)
[atdgen.dev] synchronised (file:///src)
[atdgen-codec-runtime.dev] synchronised (file:///src)
[atdgen-runtime.dev] synchronised (file:///src)
[atdj.dev] synchronised (file:///src)
[atdpy.dev] synchronised (file:///src)
[atds.dev] synchronised (file:///src)
[atdts.dev] synchronised (file:///src)


[NOTE] Package ocaml-options-vanilla is already installed (current version is 1).
[NOTE] Package ocaml-config is already installed (current version is 3).
[NOTE] Package ocaml-compiler is already installed (current version is 5.4.0).
[NOTE] Package ocaml-base-compiler is already installed (current version is 5.4.0).
[NOTE] Package ocaml is already installed (current version is 5.4.0).
[NOTE] Package base-unix is already installed (current version is base).
[NOTE] Package base-threads is already installed (current version is base).
[NOTE] Package base-nnp is already installed (current version is base).
[NOTE] Package base-effects is already installed (current version is base).
[NOTE] Package base-domains is already installed (current version is base).
[NOTE] Package base-bigarray is already installed (current version is base).


The following system packages will first need to be installed:
python3


<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>


+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "python3"
- Preconfiguring packages ...
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- Preparing to unpack .../libpython3.13-minimal_3.13.3-1ubuntu0.4_amd64.deb ...
- Unpacking libpython3.13-minimal:amd64 (3.13.3-1ubuntu0.4) ...
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- Unpacking python3.13-minimal (3.13.3-1ubuntu0.4) ...
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- Preparing to unpack .../python3_3.13.3-1_amd64.deb ...
- Unpacking python3 (3.13.3-1) ...
- Setting up media-types (13.0.0) ...
- Setting up tzdata (2025b-1ubuntu1.1) ...
- 
- Current default time zone: 'Europe/London'
- Local time is now:      Tue Dec  9 01:36:40 GMT 2025.
- Universal Time is now:  Tue Dec  9 01:36:40 UTC 2025.
- Run 'dpkg-reconfigure tzdata' if you wish to change it.
- 
- Setting up libpython3.13-stdlib:amd64 (3.13.3-1ubuntu0.4) ...
- Setting up libpython3-stdlib:amd64 (3.13.3-1) ...
- Setting up python3.13 (3.13.3-1ubuntu0.4) ...
- Setting up python3 (3.13.3-1) ...
- running python rtupdate hooks for python3.13...
- running python post-rtupdate hooks for python3.13...
2025-12-09 01:36.43 ---> saved as "750e5db08e9bc9641e595f975edc481e558b4c8ff941077bab638c9a61ccadc5"


/src: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam install $DEPS"))
[NOTE] Package ocaml-options-vanilla is already installed (current version is 1).
[NOTE] Package ocaml-config is already installed (current version is 3).
[NOTE] Package ocaml-compiler is already installed (current version is 5.4.0).
[NOTE] Package ocaml-base-compiler is already installed (current version is 5.4.0).
[NOTE] Package ocaml is already installed (current version is 5.4.0).
[NOTE] Package base-unix is already installed (current version is base).
[NOTE] Package base-threads is already installed (current version is base).
[NOTE] Package base-nnp is already installed (current version is base).
[NOTE] Package base-effects is already installed (current version is base).
[NOTE] Package base-domains is already installed (current version is base).
[NOTE] Package base-bigarray is already installed (current version is base).
The following actions will be performed:
=== install 22 packages
- install alcotest           1.9.1
- install astring            0.8.5
- install biniou             1.2.2
- install camlp-streams      5.0.1
- install cmdliner           2.1.0
- install conf-python-3      9.0.0
- install dune               3.20.2
- install easy-format        1.3.4
- install fmt                0.11.0
- install menhir             20250912
- install menhirCST          20250912
- install menhirLib          20250912
- install menhirSdk          20250912
- install ocaml-syntax-shims 1.0.0
- install ocamlbuild         0.16.1
- install ocamlfind          1.9.8
- install re                 1.14.0
- install seq                base
- install stdlib-shims       0.3.0
- install topkg              1.1.1
- install uutf               1.0.4
- install yojson             2.2.2


<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved alcotest.1.9.1  (cached)
-> retrieved astring.0.8.5  (cached)
-> retrieved biniou.1.2.2  (cached)
-> retrieved conf-python-3.9.0.0  (cached)
-> retrieved camlp-streams.5.0.1  (cached)
-> retrieved cmdliner.2.1.0  (cached)
-> retrieved easy-format.1.3.4  (cached)
-> installed conf-python-3.9.0.0
-> retrieved fmt.0.11.0  (cached)
-> retrieved ocaml-syntax-shims.1.0.0  (cached)
-> retrieved ocamlbuild.0.16.1  (cached)
-> retrieved menhir.20250912, menhirCST.20250912, menhirLib.20250912, menhirSdk.20250912  (cached)
-> retrieved dune.3.20.2  (cached)
-> retrieved seq.base  (cached)
-> installed seq.base
-> retrieved ocamlfind.1.9.8  (cached)
-> retrieved re.1.14.0  (cached)
-> retrieved stdlib-shims.0.3.0  (cached)
-> retrieved uutf.1.0.4  (cached)
-> retrieved topkg.1.1.1  (cached)
-> retrieved yojson.2.2.2  (cached)
-> installed cmdliner.2.1.0
-> installed ocamlfind.1.9.8
-> installed ocamlbuild.0.16.1
-> installed topkg.1.1.1
-> installed uutf.1.0.4
-> installed fmt.0.11.0
-> installed astring.0.8.5
-> installed dune.3.20.2
-> installed easy-format.1.3.4
-> installed menhirCST.20250912
-> installed camlp-streams.5.0.1
-> installed stdlib-shims.0.3.0
-> installed menhirSdk.20250912
2025-12-09 01:37.42: Cancelling: Auto-cancelling job because it is no longer needed
Job cancelled